HL_8IFE_100

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_100 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.155

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8IFE|1|2m|A|957
8IFE|1|2m|G|958
8IFE|1|2m|G|959
8IFE|1|2m|U|960
8IFE|1|2m|G|961
8IFE|1|2m|A|962
8IFE|1|2m|A|963
8IFE|1|2m|A|964
8IFE|1|2m|U|965
8IFE|1|2m|U|966

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2r

40S ribosomal protein S5

Chain 3L

40S ribosomal protein S14