HL_8IFE_113

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

8IFE|1|2m|U|1621, 8IFE|1|2m|U|1622, 8IFE|1|2m|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_113 not in the Motif Atlas

Homologous match to HL_8C3A_224

Geometric discrepancy: 0.2238

The information below is about HL_8C3A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

8IFE|1|2m|A|1614
8IFE|1|2m|U|1615
8IFE|1|2m|U|1616
8IFE|1|2m|G|1617
8IFE|1|2m|C|1618
8IFE|1|2m|A|1619
8IFE|1|2m|A|1620
8IFE|1|2m|U|1621
8IFE|1|2m|U|1622
8IFE|1|2m|A|1623
8IFE|1|2m|U|1624
8IFE|1|2m|U|1625

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2w

40S ribosomal protein S15

Chain 2z

40S ribosomal protein S18

Chain 3E

40S ribosomal protein S29