HL_8IFE_114
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8IFE|1|2m|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFE_114 not in the Motif Atlas
- Homologous match to HL_8C3A_225
- Geometric discrepancy: 0.3144
- The information below is about HL_8C3A_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01609.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8IFE|1|2m|G|1658
8IFE|1|2m|U|1659
8IFE|1|2m|C|1660
8IFE|1|2m|A|1661
8IFE|1|2m|U|1662
8IFE|1|2m|A|1663
8IFE|1|2m|A|1664
8IFE|1|2m|G|1665
8IFE|1|2m|C|1666
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 20
- 40S ribosomal protein S19
- Chain 21
- 40S ribosomal protein S20
- Chain 2x
- 40S ribosomal protein S16
- Chain 3E
- 40S ribosomal protein S29
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