3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCGCGAGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INE_040 not in the Motif Atlas
Geometric match to HL_7A0S_056
Geometric discrepancy: 0.2404
The information below is about HL_7A0S_056
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_45359.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8INE|1|2|C|2560
8INE|1|2|C|2561
8INE|1|2|G|2562
8INE|1|2|C|2563
8INE|1|2|G|2564
8INE|1|2|A|2565
8INE|1|2|G|2566
8INE|1|2|G|2567

Current chains

Chain 2
28S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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