HL_8INE_058

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8INE|1|2|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INE_058 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2736

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8INE|1|2|C|4193
8INE|1|2|U|4194
8INE|1|2|G|4195
8INE|1|2|OMG|4196
8INE|1|2|G|4197
8INE|1|2|G|4198
8INE|1|2|C|4199
8INE|1|2|G|4200
8INE|1|2|G|4201

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29