HL_8INE_080

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUG

Length

5 nucleotides

Bulged bases

8INE|1|8|U|110

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INE_080 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.3789

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8INE|1|8|C|107
8INE|1|8|A|108
8INE|1|8|C|109
8INE|1|8|U|110
8INE|1|8|G|112

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain M

60S ribosomal protein L37

Chain P

60S ribosomal protein L39

Chain v

Pescadillo homolog