HL_8INF_029

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

8INF|1|2|G|1869

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_029 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.2522

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8INF|1|2|G|1864
8INF|1|2|G|1865
8INF|1|2|UR3|1866
8INF|1|2|A|1867
8INF|1|2|A|1868
8INF|1|2|G|1869
8INF|1|2|C|1870

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain R

Translation machinery-associated protein 16

Chain T

Leydig cell tumor 10 kDa protein homolog

Chain f

Protein SDA1 homolog