3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUUCGCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_043 not in the Motif Atlas
Homologous match to HL_8C3A_038
Geometric discrepancy: 0.5079
The information below is about HL_8C3A_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75033.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

8INF|1|2|G|2664
8INF|1|2|U|2665
8INF|1|2|U|2666
8INF|1|2|C|2667
8INF|1|2|G|2668
8INF|1|2|C|2669
8INF|1|2|C|2670

Current chains

Chain 2
28S rRNA

Nearby chains

Chain X
60S ribosomal protein L37a
Chain a
60S ribosomal protein L19
Chain w
Ribosome biogenesis protein NOP53

Coloring options:


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