HL_8INF_049

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCGGCC

Length

9 nucleotides

Bulged bases

8INF|1|2|U|2908, 8INF|1|2|C|2909, 8INF|1|2|G|2910

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_049 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.277

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8INF|1|2|G|2907
8INF|1|2|U|2908
8INF|1|2|C|2909
8INF|1|2|G|2910
8INF|1|2|C|3584
8INF|1|2|G|3585
8INF|1|2|G|3586
8INF|1|2|C|3587
8INF|1|2|C|3588

Current chains

Chain 2

28S rRNA

Nearby chains

Chain w

Ribosome biogenesis protein NOP53