HL_8INF_069

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_069 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.1279

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8INF|1|2|C|4603
8INF|1|2|G|4604
8INF|1|2|A|4605
8INF|1|2|G|4606
8INF|1|2|A|4607
8INF|1|2|G|4608

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain 6

Eukaryotic translation initiation factor 6

Chain I

60S ribosomal protein L9

Chain e

60S ribosomal protein L23

Chain s

Ribosome biogenesis protein NSA2 homolog