3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAGAGGC
Length
8 nucleotides
Bulged bases
8INF|1|2|G|4910, 8INF|1|2|A|4911
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_073 not in the Motif Atlas
Geometric match to HL_2Y9H_003
Geometric discrepancy: 0.1118
The information below is about HL_2Y9H_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

8INF|1|2|G|4907
8INF|1|2|G|4908
8INF|1|2|A|4909
8INF|1|2|G|4910
8INF|1|2|A|4911
8INF|1|2|G|4912
8INF|1|2|G|4913
8INF|1|2|C|4914

Current chains

Chain 2
28S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain V
60S ribosomal protein L13a
Chain z
Protein LLP homolog

Coloring options:


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