HL_8INF_085
3D structure
- PDB id
- 8INF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUG(1MA)AAC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 8INF|1|2|C|1325
- QA status
- Modified nucleotides: 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8INF_085 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.3115
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8INF|1|2|U|1317
8INF|1|2|C|1318
8INF|1|2|U|1319
8INF|1|2|U|1320
8INF|1|2|G|1321
8INF|1|2|1MA|1322
8INF|1|2|A|1323
8INF|1|2|A|1324
8INF|1|2|C|1325
8INF|1|2|A2M|1326
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L27a
- Chain k
- 60S ribosomal protein L32
Coloring options: