3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UCUUG(1MA)AAC(A2M)
Length
10 nucleotides
Bulged bases
8INF|1|2|C|1325
QA status
Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_085 not in the Motif Atlas
Homologous match to HL_8C3A_014
Geometric discrepancy: 0.3115
The information below is about HL_8C3A_014
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8INF|1|2|U|1317
8INF|1|2|C|1318
8INF|1|2|U|1319
8INF|1|2|U|1320
8INF|1|2|G|1321
8INF|1|2|1MA|1322
8INF|1|2|A|1323
8INF|1|2|A|1324
8INF|1|2|C|1325
8INF|1|2|A2M|1326

Current chains

Chain 2
28S rRNA

Nearby chains

Chain L
60S ribosomal protein L27a
Chain k
60S ribosomal protein L32

Coloring options:


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