HL_8INK_049

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGCGGCC

Length

9 nucleotides

Bulged bases

8INK|1|2|U|2908, 8INK|1|2|C|2909, 8INK|1|2|G|2910, 8INK|1|2|G|3586, 8INK|1|2|C|3587

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_049 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3841

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8INK|1|2|G|2907
8INK|1|2|U|2908
8INK|1|2|C|2909
8INK|1|2|G|2910
8INK|1|2|C|3584
8INK|1|2|G|3585
8INK|1|2|G|3586
8INK|1|2|C|3587
8INK|1|2|C|3588

Current chains

Chain 2

28S rRNA

Nearby chains