HL_8INK_074

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8INK|1|2|C|5023

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_074 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3602

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8INK|1|2|C|5021
8INK|1|2|U|5022
8INK|1|2|C|5023
8INK|1|2|C|5024
8INK|1|2|C|5025
8INK|1|2|U|5026
8INK|1|2|C|5027
8INK|1|2|G|5028

Current chains

Chain 2

28S rRNA

Nearby chains