HL_8IP8_009
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAGACUCC
- Length
- 10 nucleotides
- Bulged bases
- 8IP8|1|RB|G|302, 8IP8|1|RB|U|303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.141
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|G|301
8IP8|1|RB|G|302
8IP8|1|RB|U|303
8IP8|1|RB|A|304
8IP8|1|RB|G|305
8IP8|1|RB|A|306
8IP8|1|RB|C|307
8IP8|1|RB|U|308
8IP8|1|RB|C|309
8IP8|1|RB|C|310
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein eL36
- Chain HA
- 60S ribosomal protein eL15
- Chain IA
- 60S ribosomal protein uL15
- Chain KB
- 60S ribosomal protein eL13
- Chain WA
- 60S ribosomal protein eL42
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