8IP8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8IP8_001 | 1/RB/37:44 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_8IP8_002 | 1/RB/68:73 | No text annotation | homologous HL_8P9A_114 HL_51020.2 | |
| HL_8IP8_003 | 1/RB/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8IP8_004 | 1/RB/131:135 | No text annotation | homologous HL_8P9A_116 HL_32346.6 | |
| HL_8IP8_005 | 1/RB/192:199 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.2 | |
| HL_8IP8_006 | 1/RB/206:210 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_8IP8_007 | 1/RB/214:222 | T-loop with unstacked turn | homologous HL_8P9A_119 HL_27670.3 | |
| HL_8IP8_008 | 1/RB/276:285 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8IP8_009 | 1/RB/301:310 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8IP8_010 | 1/RB/355:360 | GNRA | homologous HL_8P9A_122 HL_34789.2 | |
| HL_8IP8_011 | 1/RB/380:385 | GNRA | homologous HL_8P9A_123 HL_34789.2 | |
| HL_8IP8_013 | 1/RB/535:543 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_8IP8_014 | 1/RB/583:588 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_8IP8_116 | 1/RB/597:601 | No text annotation | ||
| HL_8IP8_016 | 1/RB/644:653 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8IP8_017 | 1/RB/690:699 | No text annotation | ||
| HL_8IP8_018 | 1/RB/713:718 | GNRA | homologous HL_8P9A_128 HL_34789.2 | |
| HL_8IP8_019 | 1/RB/735:740 | GNRA | homologous HL_8P9A_129 HL_34789.2 | |
| HL_8IP8_020 | 1/RB/766:771 | No text annotation | homologous HL_8P9A_130 HL_44506.2 | |
| HL_8IP8_021 | 1/RB/847:852 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8IP8_022 | 1/RB/879:888 | No text annotation | homologous HL_8P9A_132 HL_50204.1 | |
| HL_8IP8_023 | 1/RB/913:921 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_8IP8_024 | 1/RB/961:966 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_8IP8_026 | 1/RB/1080:1087 | T-loop related | homologous HL_8P9A_136 HL_63894.2 | |
| HL_8IP8_027 | 1/RB/1129:1135 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8IP8_028 | 1/RB/1151:1158 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8IP8_029 | 1/RB/1238:1258 | No text annotation | ||
| HL_8IP8_030 | 1/RB/1351:1361 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_8IP8_031 | 1/RB/1406:1411 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8IP8_032 | 1/RB/1465:1473 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8IP8_033 | 1/RB/1508:1516 | No text annotation | geometric HL_1KH6_003 HL_33487.1 | |
| HL_8IP8_034 | 1/RB/1547:1552 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8IP8_035 | 1/RB/1567:1572 | No text annotation | geometric HL_8C3A_013 NA | |
| HL_8IP8_036 | 1/RB/1596:1606 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_8IP8_037 | 1/RB/1631:1636 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8IP8_038 | 1/RB/1677:1685 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8IP8_039 | 1/RB/1717:1723 | No text annotation | geometric HL_5HR7_005 HL_50006.5 | |
| HL_8IP8_040 | 1/RB/1754:1765 | No text annotation | ||
| HL_8IP8_041 | 1/RB/1788:1792 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8IP8_042 | 1/RB/1840:1847 | No text annotation | homologous HL_8P9A_152 HL_28592.1 | |
| HL_8IP8_043 | 1/RB/1858:1864 | GNRA | homologous HL_8P9A_153 HL_34789.2 | |
| HL_8IP8_044 | 1/RB/1919:1924 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8IP8_046 | 1/RB/2104:2108 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8IP8_047 | 1/RB/2129:2139 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_8IP8_048 | 1/RB/2158:2163 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8IP8_049 | 1/RB/2213:2218 | GNRA | homologous HL_8C3A_048 NA | |
| HL_8IP8_050 | 1/RB/2246:2256 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8IP8_051 | 1/RB/2285:2293 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8IP8_052 | 1/RB/2362:2371 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8IP8_054 | 1/RB/2532:2539 | No text annotation | ||
| HL_8IP8_117 | 1/RB/2561:2571 | No text annotation | ||
| HL_8IP8_055 | 1/RB/2563:2569 | No text annotation | ||
| HL_8IP8_056 | 1/RB/2613:2621 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8IP8_057 | 1/RB/2630:2642 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8IP8_058 | 1/RB/2670:2678 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8IP8_059 | 1/RB/2690:2697 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.2 | |
| HL_8IP8_060 | 1/RB/2721:2729 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8IP8_061 | 1/RB/2741:2746 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8IP8_062 | 1/RB/2773:2781 | Pseudoknot geometry | homologous HL_8P9A_171 HL_52651.2 | |
| HL_8IP8_063 | 1/RB/2837:2845 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
| HL_8IP8_064 | 1/RB/2894:2901 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_8IP8_065 | 1/RB/2917:2923 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_8IP8_066 | 1/RB/2960:2965 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8IP8_067 | 1/RB/3021:3026 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8IP8_068 | 1/RB/3064:3069 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8IP8_069 | 1/RB/3106:3120 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8IP8_070 | 1/RB/3184:3187 | No text annotation | geometric HL_8VTW_051 NA | |
| HL_8IP8_071 | 1/RB/3228:3232 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8IP8_072 | 1/RB/3290:3298 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8IP8_073 | 1/RB/3336:3343 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_8IP8_118 | 1/SB/47:56 | Pseudoknot with intercalation | geometric HL_8C3A_229 NA | |
| HL_8IP8_074 | 1/SB/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_8IP8_075 | 1/SB/108:114 | No text annotation | homologous HL_8P9A_188 HL_13184.2 | |
| HL_8IP8_119 | 1/TB/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_8IP8_077 | 1/TB/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_8IP8_078 | 1/TB/86:91 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8IP8_079 | 1/aa/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8IP8_080 | 1/aa/70:82 | No text annotation | ||
| HL_8IP8_081 | 1/aa/152:158 | GNRA related | homologous HL_8P9A_192 HL_34789.2 | |
| HL_8IP8_082 | 1/aa/188:193 | No text annotation | ||
| HL_8IP8_083 | 1/aa/246:253 | T-loop with 1 bulged base | homologous HL_8P9A_195 HL_67772.1 | |
| HL_8IP8_084 | 1/aa/278:285 | No text annotation | ||
| HL_8IP8_085 | 1/aa/334:342 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8IP8_086 | 1/aa/372:377 | No text annotation | homologous HL_8P9A_198 HL_93535.2 | |
| HL_8IP8_087 | 1/aa/397:408 | No text annotation | homologous HL_8P9A_199 HL_86432.1 | |
| HL_8IP8_088 | 1/aa/418:423 | UNCG | homologous HL_8P9A_200 HL_61337.2 | |
| HL_8IP8_089 | 1/aa/454:460 | No text annotation | homologous HL_8C3A_203 NA | |
| HL_8IP8_090 | 1/aa/491:503 | No text annotation | ||
| HL_8IP8_091 | 1/aa/524:536 | No text annotation | homologous HL_8P9A_203 HL_68749.1 | |
| HL_8IP8_092 | 1/aa/573:578 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8IP8_094 | 1/aa/770:778 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8IP8_121 | 1/aa/833:849 | No text annotation | ||
| HL_8IP8_096 | 1/aa/905:914 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8IP8_097 | 1/aa/942:947 | GNRA | homologous HL_8P9A_210 HL_34789.2 | |
| HL_8IP8_098 | 1/aa/1002:1012 | No text annotation | homologous HL_8P9A_211 HL_38491.2 | |
| HL_8IP8_120 | 1/aa/1056:1072 | No text annotation | ||
| HL_8IP8_099 | 1/aa/1062:1068 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_8IP8_100 | 1/aa/1089:1094 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8IP8_101 | 1/aa/1126:1131 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8IP8_102 | 1/aa/1192:1201 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8IP8_103 | 1/aa/1242:1251 | GNRA wlth extra near cWW | homologous HL_8P9A_216 HL_98423.2 | |
| HL_8IP8_104 | 1/aa/1300:1305 | GNRA | homologous HL_8C3A_219 NA | |
| HL_8IP8_105 | 1/aa/1313:1320 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8IP8_106 | 1/aa/1363:1370 | No text annotation | ||
| HL_8IP8_107 | 1/aa/1402:1408 | No text annotation | homologous HL_8P9A_220 HL_76371.2 | |
| HL_8IP8_108 | 1/aa/1509:1514 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8IP8_109 | 1/aa/1558:1569 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8IP8_110 | 1/aa/1602:1610 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8IP8_112 | 1/aa/1788:1793 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8IP8_113 | 1/cl/13:22 | No text annotation | homologous HL_7YSE_001 NA | |
| HL_8IP8_114 | 1/cl/31:39 | tRNA anticodon loop | homologous HL_9DFC_104 NA | |
| HL_8IP8_115 | 1/cl/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QF6_003 HL_33597.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8IP8_012 | No text annotation | ||
| HL_8IP8_015 | No text annotation | ||
| HL_8IP8_025 | No text annotation | ||
| HL_8IP8_045 | Externally structured | ||
| HL_8IP8_053 | No text annotation | ||
| HL_8IP8_076 | Externally structured | ||
| HL_8IP8_093 | No text annotation | ||
| HL_8IP8_095 | No text annotation | ||
| HL_8IP8_111 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8IP8_001 | 1/RB/5:7, 1/SB/152:155 | No text annotation | homologous IL_8C3A_001 NA | |
| IL_8IP8_002 | 1/RB/9:12, 1/SB/147:150 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_15225.2 | |
| IL_8IP8_003 | 1/RB/12:14, 1/SB/146:147 | Single bulged G | geometric IL_4WF9_023 IL_28408.2 | |
| IL_8IP8_255 | 1/RB/12:17, 1/SB/143:147 | No text annotation | ||
| IL_8IP8_004 | 1/RB/14:17, 1/SB/143:146 | Tandem non-canonical cWW pairs | geometric IL_422D_001 NA | |
| IL_8IP8_005 | 1/RB/30:37, 1/RB/44:52 | tSH-tHW-tHH-tHS | homologous IL_8P9A_234 IL_93502.1 | |
| IL_8IP8_006 | 1/RB/81:89, 1/RB/95:102 | No text annotation | ||
| IL_8IP8_007 | 1/RB/122:123, 1/RB/143:148 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8IP8_008 | 1/RB/158:159, 1/RB/258:260 | Multiple bulged bases | geometric IL_4YAZ_008 IL_71421.2 | |
| IL_8IP8_009 | 1/RB/162:164, 1/RB/254:255 | Minor groove platform | geometric IL_6DLR_003 IL_34520.2 | |
| IL_8IP8_010 | 1/RB/167:169, 1/RB/245:251 | No text annotation | ||
| IL_8IP8_271 | 1/RB/175:177, 1/RB/235:239 | No text annotation | ||
| IL_8IP8_014 | 1/RB/187:189, 1/RB/202:203 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8IP8_015 | 1/RB/335:337, 1/SB/25:26 | Single bulged A | homologous IL_8P9A_242 IL_14190.2 | |
| IL_8IP8_016 | 1/RB/374:377, 1/RB/388:401 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8IP8_017 | 1/RB/402:408, 1/SB/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_8IP8_018 | 1/RB/431:432, 1/RB/628:630 | Single bulged U | geometric IL_6JQ6_006 IL_97561.2 | |
| IL_8IP8_019 | 1/RB/434:437, 1/RB/625:626 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8IP8_022 | 1/RB/498:501, 1/RB/618:621 | No text annotation | geometric IL_7MLW_007 IL_49140.1 | |
| IL_8IP8_023 | 1/RB/512:514, 1/RB/563:565 | Isolated non-canonical cWW pair | geometric IL_8C3A_130 NA | |
| IL_8IP8_024 | 1/RB/522:529, 1/RB/549:555 | No text annotation | ||
| IL_8IP8_025 | 1/RB/672:674, 1/RB/795:797 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8IP8_026 | 1/RB/683:688, 1/RB/701:707 | No text annotation | ||
| IL_8IP8_027 | 1/RB/728:731, 1/RB/744:748 | UAA/GAN variation | homologous IL_8P9A_251 IL_45790.1 | |
| IL_8IP8_028 | 1/RB/755:756, 1/RB/782:784 | Single bulged A | homologous IL_8P9A_252 IL_14190.2 | |
| IL_8IP8_029 | 1/RB/758:759, 1/RB/778:780 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8IP8_030 | 1/RB/760:766, 1/RB/771:777 | No text annotation | ||
| IL_8IP8_031 | 1/RB/806:808, 1/RB/941:943 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.2 | |
| IL_8IP8_032 | 1/RB/808:812, 1/RB/934:941 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_8IP8_033 | 1/RB/836:837, 1/RB/862:864 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8IP8_034 | 1/RB/837:841, 1/RB/858:862 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8IP8_035 | 1/RB/872:875, 1/RB/891:893 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8IP8_036 | 1/RB/876:878, 1/RB/889:890 | Single bulged U | homologous IL_8P9A_260 IL_97561.2 | |
| IL_8IP8_037 | 1/RB/910:912, 1/RB/922:926 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8IP8_038 | 1/RB/957:959, 1/RB/968:970 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.2 | |
| IL_8IP8_039 | 1/RB/972:973, 1/RB/1114:1116 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8IP8_040 | 1/RB/978:979, 1/RB/1107:1109 | No text annotation | ||
| IL_8IP8_041 | 1/RB/980:985, 1/RB/1105:1106 | No text annotation | ||
| IL_8IP8_042 | 1/RB/987:989, 1/RB/1102:1103 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8IP8_043 | 1/RB/995:1001, 1/RB/1056:1062 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_8IP8_044 | 1/RB/1001:1002, 1/RB/1054:1056 | Minor groove platform | homologous IL_8P9A_267 IL_34520.2 | |
| IL_8IP8_045 | 1/RB/1003:1008, 1/RB/1050:1053 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8IP8_257 | 1/RB/1010:1013, 1/RB/1045:1048 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8IP8_047 | 1/RB/1013:1015, 1/RB/1043:1045 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.2 | |
| IL_8IP8_048 | 1/RB/1017:1022, 1/RB/1038:1041 | No text annotation | homologous IL_8C3A_046 NA | |
| IL_8IP8_050 | 1/RB/1078:1080, 1/RB/1087:1088 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8IP8_051 | 1/RB/1123:1125, 1/RB/1139:1141 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.2 | |
| IL_8IP8_053 | 1/RB/1170:1174, 1/RB/1332:1336 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8IP8_054 | 1/RB/1176:1183, 1/RB/1329:1330 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8IP8_055 | 1/RB/1183:1185, 1/RB/1328:1329 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_8IP8_056 | 1/RB/1190:1198, 1/RB/1318:1323 | No text annotation | homologous IL_8P9A_279 IL_39054.1 | |
| IL_8IP8_057 | 1/RB/1198:1209, 1/RB/1303:1318 | No text annotation | homologous IL_8C3A_055 NA | |
| IL_8IP8_058 | 1/RB/1211:1213, 1/RB/1300:1301 | Single bulged U | homologous IL_8P9A_281 IL_97561.2 | |
| IL_8IP8_059 | 1/RB/1218:1220, 1/RB/1293:1295 | Isolated non-canonical cWW pair | geometric IL_7MLW_001 IL_01003.2 | |
| IL_8IP8_060 | 1/RB/1222:1230, 1/RB/1287:1291 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_8IP8_273 | 1/RB/1234:1236, 1/RB/1260:1284 | No text annotation | ||
| IL_8IP8_063 | 1/RB/1346:1348, 1/RB/1364:1366 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.2 | |
| IL_8IP8_064 | 1/RB/1380:1382, 1/RB/1431:1434 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8IP8_065 | 1/RB/1390:1399, 1/RB/1417:1423 | No text annotation | ||
| IL_8IP8_066 | 1/RB/1401:1403, 1/RB/1414:1415 | Single bulged A | homologous IL_8P9A_288 IL_14190.2 | |
| IL_8IP8_067 | 1/RB/1447:1453, 1/RB/2347:2352 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_8IP8_068 | 1/RB/1504:1508, 1/RB/1516:1518 | Minor groove platform | geometric IL_4LFB_037 IL_61370.1 | |
| IL_8IP8_069 | 1/RB/1535:1539, 1/RB/1582:1587 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8IP8_070 | 1/RB/1544:1545, 1/RB/1554:1557 | Multiple bulged bases | geometric IL_4YAZ_008 IL_71421.2 | |
| IL_8IP8_071 | 1/RB/1616:1619, 1/RB/1820:1822 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8IP8_072 | 1/RB/1621:1622, 1/RB/1816:1818 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_8IP8_073 | 1/RB/1625:1628, 1/RB/1807:1813 | No text annotation | ||
| IL_8IP8_074 | 1/RB/1642:1646, 1/RB/1802:1806 | Triple sheared | homologous IL_8P9A_295 IL_15190.2 | |
| IL_8IP8_075 | 1/RB/1658:1660, 1/RB/1782:1784 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8IP8_076 | 1/RB/1666:1667, 1/RB/1774:1776 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8IP8_077 | 1/RB/1667:1669, 1/RB/1771:1774 | No text annotation | geometric IL_8C3A_070 NA | |
| IL_8IP8_078 | 1/RB/1672:1674, 1/RB/1688:1690 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.2 | |
| IL_8IP8_079 | 1/RB/1691:1695, 1/RB/1745:1750 | No text annotation | homologous IL_8P9A_299 IL_25943.1 | |
| IL_8IP8_080 | 1/RB/1699:1700, 1/RB/1739:1741 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_8IP8_081 | 1/RB/1700:1705, 1/RB/1735:1739 | No text annotation | ||
| IL_8IP8_082 | 1/RB/1709:1715, 1/RB/1725:1731 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8IP8_083 | 1/RB/1879:1885, 1/RB/2339:2342 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8IP8_084 | 1/RB/1891:1893, 1/RB/2331:2333 | No text annotation | homologous IL_8P9A_303 IL_10432.1 | |
| IL_8IP8_085 | 1/RB/1894:1897, 1/RB/2329:2330 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8IP8_259 | 1/RB/1894:1902, 1/RB/2326:2330 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8IP8_086 | 1/RB/1897:1902, 1/RB/2326:2329 | No text annotation | geometric IL_8C3A_083 NA | |
| IL_8IP8_087 | 1/RB/1914:1919, 1/RB/1924:1930 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8IP8_088 | 1/RB/1936:1938, 1/RB/2100:2102 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8IP8_089 | 1/RB/1943:1944, 1/RB/2092:2095 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8IP8_090 | 1/RB/2122:2123, 1/RB/2316:2318 | Single bulged A | homologous IL_8P9A_310 IL_14190.2 | |
| IL_8IP8_091 | 1/RB/2150:2155, 1/RB/2166:2173 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8IP8_092 | 1/RB/2189:2192, 1/RB/2238:2239 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8IP8_093 | 1/RB/2193:2194, 1/RB/2234:2237 | Major groove intercalation | homologous IL_8P9A_313 IL_71421.2 | |
| IL_8IP8_094 | 1/RB/2197:2199, 1/RB/2230:2231 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8IP8_095 | 1/RB/2199:2203, 1/RB/2228:2230 | No text annotation | ||
| IL_8IP8_096 | 1/RB/2204:2210, 1/RB/2221:2227 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
| IL_8IP8_097 | 1/RB/2269:2270, 1/RB/2300:2303 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8IP8_098 | 1/RB/2270:2281, 1/RB/2297:2300 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8IP8_099 | 1/RB/2384:2387, 1/RB/2983:2985 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_8IP8_100 | 1/RB/2389:2391, 1/RB/2978:2981 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8IP8_101 | 1/RB/2402:2404, 1/RB/2808:2809 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8IP8_102 | 1/RB/2405:2406, 1/RB/2804:2807 | Minor groove platform | homologous IL_8P9A_322 IL_34520.2 | |
| IL_8IP8_103 | 1/RB/2416:2418, 1/RB/2601:2604 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8IP8_105 | 1/RB/2420:2422, 1/RB/2597:2599 | Isolated non-canonical cWW pair | geometric IL_8C3A_130 NA | |
| IL_8IP8_107 | 1/RB/2517:2523, 1/RB/2581:2584 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8IP8_108 | 1/RB/2528:2530, 1/RB/2541:2543 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_01003.2 | |
| IL_8IP8_110 | 1/RB/2625:2627, 1/RB/2645:2647 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.5 | |
| IL_8IP8_111 | 1/RB/2663:2665, 1/RB/2683:2687 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_8IP8_112 | 1/RB/2711:2713, 1/RB/2737:2738 | Single bulged A | geometric IL_8C3A_014 NA | |
| IL_8IP8_113 | 1/RB/2715:2718, 1/RB/2732:2735 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
| IL_8IP8_114 | 1/RB/2767:2770, 1/RB/2784:2785 | Single stack bend | geometric IL_5TBW_101 NA | |
| IL_8IP8_115 | 1/RB/2820:2821, 1/RB/2862:2864 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_8IP8_260 | 1/RB/2820:2823, 1/RB/2860:2864 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8IP8_116 | 1/RB/2821:2823, 1/RB/2860:2862 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_8IP8_117 | 1/RB/2823:2825, 1/RB/2859:2860 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_8IP8_118 | 1/RB/2825:2827, 1/RB/2855:2859 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8IP8_119 | 1/RB/2832:2836, 1/RB/2846:2850 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8IP8_120 | 1/RB/2873:2874, 1/RB/2946:2948 | No text annotation | homologous IL_8P9A_334 IL_46637.2 | |
| IL_8IP8_121 | 1/RB/2876:2878, 1/RB/2940:2944 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8IP8_122 | 1/RB/2878:2879, 1/RB/2937:2940 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8IP8_123 | 1/RB/2888:2890, 1/RB/2905:2909 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_8IP8_124 | 1/RB/2890:2892, 1/RB/2903:2905 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_8IP8_125 | 1/RB/2915:2917, 1/RB/2923:2925 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_01003.2 | |
| IL_8IP8_126 | 1/RB/2957:2958, 1/RB/2967:2969 | Single bulged A | homologous IL_8P9A_341 IL_14190.2 | |
| IL_8IP8_127 | 1/RB/3000:3003, 1/RB/3135:3140 | Double sheared | homologous IL_8P9A_342 IL_58355.2 | |
| IL_8IP8_128 | 1/RB/3008:3010, 1/RB/3036:3038 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.2 | |
| IL_8IP8_129 | 1/RB/3014:3021, 1/RB/3026:3032 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8IP8_130 | 1/RB/3043:3047, 1/RB/3087:3090 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_8IP8_131 | 1/RB/3050:3055, 1/RB/3080:3084 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8IP8_132 | 1/RB/3059:3060, 1/RB/3073:3076 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8IP8_133 | 1/RB/3099:3103, 1/RB/3123:3127 | UAA/GAN | homologous IL_8P9A_348 IL_08938.1 | |
| IL_8IP8_134 | 1/RB/3167:3169, 1/RB/3199:3200 | Single bulged A | homologous IL_8P9A_351 IL_14190.2 | |
| IL_8IP8_135 | 1/RB/3170:3178, 1/RB/3193:3198 | No text annotation | ||
| IL_8IP8_136 | 1/RB/3213:3217, 1/RB/3245:3247 | No text annotation | geometric IL_2OEU_001 IL_46387.3 | |
| IL_8IP8_138 | 1/RB/3222:3224, 1/RB/3237:3240 | No text annotation | ||
| IL_8IP8_139 | 1/RB/3227:3228, 1/RB/3232:3234 | Single bulged U | geometric IL_6M0X_002 IL_97561.2 | |
| IL_8IP8_140 | 1/RB/3287:3290, 1/RB/3298:3301 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_8IP8_141 | 1/RB/3311:3312, 1/RB/3368:3372 | Multiple bulged bases | geometric IL_4YAZ_008 IL_71421.2 | |
| IL_8IP8_142 | 1/RB/3315:3317, 1/RB/3360:3365 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8IP8_143 | 1/RB/3319:3324, 1/RB/3354:3358 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8IP8_144 | 1/RB/3327:3329, 1/RB/3350:3351 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8IP8_145 | 1/RB/3329:3332, 1/RB/3347:3350 | Double sheared; A in syn | homologous IL_8P9A_362 IL_58355.2 | |
| IL_8IP8_146 | 1/SB/44:64, 1/SB/96:100 | No text annotation | homologous IL_8C3A_150 NA | |
| IL_8IP8_147 | 1/SB/64:65, 1/SB/94:96 | No text annotation | ||
| IL_8IP8_148 | 1/SB/68:69, 1/SB/89:91 | Single bulged U | homologous IL_8P9A_372 IL_97561.2 | |
| IL_8IP8_149 | 1/SB/119:122, 1/SB/133:136 | Double sheared | geometric IL_8CRE_402 IL_58355.2 | |
| IL_8IP8_150 | 1/TB/15:16, 1/TB/62:64 | Single bulged A | homologous IL_8P9A_364 IL_14190.2 | |
| IL_8IP8_151 | 1/TB/20:27, 1/TB/52:58 | No text annotation | ||
| IL_8IP8_152 | 1/TB/28:29, 1/TB/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_8IP8_153 | 1/TB/32:36, 1/TB/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_8IP8_154 | 1/TB/70:78, 1/TB/98:105 | No text annotation | ||
| IL_8IP8_155 | 1/TB/78:80, 1/TB/96:98 | Isolated non-canonical cWW pair | geometric IL_7VFT_002 IL_42997.5 | |
| IL_8IP8_156 | 1/TB/83:85, 1/TB/92:93 | Single bulged U | homologous IL_4V9F_107 IL_97561.2 | |
| IL_8IP8_157 | 1/aa/24:26, 1/aa/604:605 | Single bulged C | homologous IL_8P9A_373 IL_05642.2 | |
| IL_8IP8_158 | 1/aa/35:37, 1/aa/475:477 | Isolated non-canonical cWW pair | homologous IL_8P9A_374 IL_01003.2 | |
| IL_8IP8_159 | 1/aa/37:41, 1/aa/470:475 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8IP8_160 | 1/aa/42:48, 1/aa/435:437 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8IP8_161 | 1/aa/50:52, 1/aa/432:433 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_8IP8_162 | 1/aa/58:63, 1/aa/88:90 | No text annotation | homologous IL_8P9A_378 IL_61299.6 | |
| IL_8IP8_261 | 1/aa/64:69, 1/aa/83:87 | No text annotation | ||
| IL_8IP8_164 | 1/aa/110:113, 1/aa/306:309 | Tandem non-canonical cWW pairs | homologous IL_8P9A_380 IL_71194.2 | |
| IL_8IP8_165 | 1/aa/114:117, 1/aa/304:305 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8IP8_166 | 1/aa/118:123, 1/aa/299:303 | No text annotation | homologous IL_8P9A_382 IL_31545.1 | |
| IL_8IP8_168 | 1/aa/141:147, 1/aa/163:170 | No text annotation | homologous IL_8P9A_383 IL_24485.1 | |
| IL_8IP8_169 | 1/aa/147:150, 1/aa/160:163 | No text annotation | homologous IL_8C3A_403 NA | |
| IL_8IP8_170 | 1/aa/184:187, 1/aa/194:197 | Double sheared | homologous IL_8P9A_385 IL_58355.2 | |
| IL_8IP8_171 | 1/aa/201:202, 1/aa/264:266 | Minor groove platform | geometric IL_8VTW_027 NA | |
| IL_8IP8_172 | 1/aa/202:203, 1/aa/262:264 | Single bulged C | geometric IL_5J7L_276 NA | |
| IL_8IP8_173 | 1/aa/203:205, 1/aa/260:262 | Isolated non-canonical cWW pair | homologous IL_8C3A_406 NA | |
| IL_8IP8_175 | 1/aa/268:270, 1/aa/292:293 | Single bulged A | homologous IL_8P9A_388 IL_14190.2 | |
| IL_8IP8_262 | 1/aa/273:276, 1/aa/287:289 | No text annotation | homologous IL_8P9A_389 IL_15698.5 | |
| IL_8IP8_177 | 1/aa/315:320, 1/aa/352:359 | Kink-turn with non-sequential stacking | homologous IL_8P9A_391 IL_46174.4 | |
| IL_8IP8_178 | 1/aa/322:327, 1/aa/349:350 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_8IP8_179 | 1/aa/367:369, 1/aa/380:385 | No text annotation | homologous IL_8P9A_393 IL_93336.1 | |
| IL_8IP8_180 | 1/aa/393:395, 1/aa/410:412 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8IP8_181 | 1/aa/415:417, 1/aa/424:426 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8IP8_182 | 1/aa/443:445, 1/aa/467:468 | Single bulged U | homologous IL_8P9A_396 IL_97561.2 | |
| IL_8IP8_183 | 1/aa/447:451, 1/aa/464:465 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8IP8_184 | 1/aa/451:452, 1/aa/462:464 | Single bulged G | homologous IL_8P9A_398 IL_28408.2 | |
| IL_8IP8_185 | 1/aa/484:486, 1/aa/509:512 | Isolated cWH basepair | geometric IL_3D0M_002 NA | |
| IL_8IP8_186 | 1/aa/486:489, 1/aa/507:509 | No text annotation | ||
| IL_8IP8_188 | 1/aa/520:522, 1/aa/537:540 | No text annotation | geometric IL_8VTW_030 NA | |
| IL_8IP8_274 | 1/aa/521:524, 1/aa/536:539 | Double sheared | geometric IL_4UYK_005 IL_58355.2 | |
| IL_8IP8_189 | 1/aa/522:524, 1/aa/536:537 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8IP8_190 | 1/aa/554:561, 1/aa/591:592 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8IP8_191 | 1/aa/561:563, 1/aa/590:591 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8IP8_192 | 1/aa/566:572, 1/aa/579:587 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_8IP8_193 | 1/aa/618:620, 1/aa/1110:1112 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_8IP8_194 | 1/aa/620:626, 1/aa/1109:1110 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8IP8_195 | 1/aa/628:630, 1/aa/978:980 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8IP8_196 | 1/aa/631:635, 1/aa/973:977 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8IP8_198 | 1/aa/752:753, 1/aa/808:811 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8IP8_199 | 1/aa/754:756, 1/aa/805:807 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_71625.2 | |
| IL_8IP8_200 | 1/aa/757:765, 1/aa/797:804 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8IP8_201 | 1/aa/766:769, 1/aa/779:796 | No text annotation | ||
| IL_8IP8_202 | 1/aa/823:827, 1/aa/856:859 | No text annotation | ||
| IL_8IP8_264 | 1/aa/824:832, 1/aa/850:858 | No text annotation | ||
| IL_8IP8_203 | 1/aa/827:832, 1/aa/850:856 | No text annotation | ||
| IL_8IP8_204 | 1/aa/870:871, 1/aa/967:970 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_8IP8_265 | 1/aa/873:874, 1/aa/963:965 | Single bulged U | geometric IL_3NDB_005 NA | |
| IL_8IP8_206 | 1/aa/876:879, 1/aa/958:961 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.2 | |
| IL_8IP8_207 | 1/aa/879:883, 1/aa/955:958 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8IP8_208 | 1/aa/890:893, 1/aa/929:932 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
| IL_8IP8_266 | 1/aa/900:904, 1/aa/915:922 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_8IP8_210 | 1/aa/990:995, 1/aa/1019:1021 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8IP8_211 | 1/aa/995:999, 1/aa/1015:1019 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8IP8_212 | 1/aa/1039:1041, 1/aa/1100:1106 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8IP8_213 | 1/aa/1046:1049, 1/aa/1079:1082 | Tandem non-canonical cWW pairs | homologous IL_8P9A_426 IL_15225.2 | |
| IL_8IP8_214 | 1/aa/1056:1058, 1/aa/1071:1072 | No text annotation | ||
| IL_8IP8_216 | 1/aa/1060:1062, 1/aa/1068:1069 | No text annotation | ||
| IL_8IP8_217 | 1/aa/1116:1123, 1/aa/1134:1139 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8P9A_428 IL_84044.1 | |
| IL_8IP8_218 | 1/aa/1151:1152, 1/aa/1638:1640 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8IP8_219 | 1/aa/1154:1156, 1/aa/1635:1636 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8IP8_220 | 1/aa/1162:1165, 1/aa/1625:1629 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8IP8_221 | 1/aa/1178:1180, 1/aa/1470:1472 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_8IP8_222 | 1/aa/1183:1185, 1/aa/1464:1467 | No text annotation | ||
| IL_8IP8_223 | 1/aa/1217:1219, 1/aa/1454:1456 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8IP8_224 | 1/aa/1228:1234, 1/aa/1261:1263 | No text annotation | ||
| IL_8IP8_267 | 1/aa/1228:1237, 1/aa/1256:1263 | Kink-turn | geometric IL_4V88_447 NA | |
| IL_8IP8_226 | 1/aa/1238:1241, 1/aa/1252:1255 | No text annotation | ||
| IL_8IP8_227 | 1/aa/1272:1274, 1/aa/1446:1447 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8IP8_228 | 1/aa/1276:1280, 1/aa/1442:1444 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_8IP8_268 | 1/aa/1276:1282, 1/aa/1436:1444 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_8IP8_229 | 1/aa/1280:1282, 1/aa/1436:1442 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_8IP8_230 | 1/aa/1284:1285, 1/aa/1432:1434 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8IP8_231 | 1/aa/1293:1296, 1/aa/1327:1330 | No text annotation | geometric IL_8BH9_001 IL_65740.1 | |
| IL_8IP8_232 | 1/aa/1310:1312, 1/aa/1321:1322 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8IP8_233 | 1/aa/1343:1346, 1/aa/1389:1391 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_01003.2 | |
| IL_8IP8_234 | 1/aa/1349:1352, 1/aa/1383:1386 | No text annotation | homologous IL_8P9A_445 IL_78800.2 | |
| IL_8IP8_269 | 1/aa/1353:1357, 1/aa/1376:1382 | Partly complementary | geometric IL_6CZR_167 NA | |
| IL_8IP8_236 | 1/aa/1395:1398, 1/aa/1412:1418 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_8IP8_237 | 1/aa/1483:1485, 1/aa/1536:1538 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_8IP8_270 | 1/aa/1485:1493, 1/aa/1527:1536 | No text annotation | ||
| IL_8IP8_238 | 1/aa/1494:1502, 1/aa/1521:1526 | No text annotation | ||
| IL_8IP8_239 | 1/aa/1504:1506, 1/aa/1517:1519 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_8IP8_240 | 1/aa/1548:1553, 1/aa/1574:1579 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_8IP8_241 | 1/aa/1644:1646, 1/aa/1774:1777 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_8IP8_242 | 1/aa/1646:1649, 1/aa/1770:1774 | No text annotation | homologous IL_8P9A_453 IL_25873.2 | |
| IL_8IP8_243 | 1/aa/1650:1652, 1/aa/1767:1769 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8IP8_244 | 1/aa/1652:1654, 1/aa/1764:1767 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_8IP8_245 | 1/aa/1655:1657, 1/aa/1761:1763 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.2 | |
| IL_8IP8_246 | 1/aa/1658:1660, 1/aa/1758:1760 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8IP8_247 | 1/aa/1661:1664, 1/aa/1754:1757 | Double sheared | homologous IL_8P9A_457 IL_58355.2 | |
| IL_8IP8_248 | 1/aa/1664:1666, 1/aa/1753:1754 | Single bulged U | homologous IL_8P9A_458 IL_97561.2 | |
| IL_8IP8_249 | 1/aa/1672:1675, 1/aa/1744:1747 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_8IP8_250 | 1/aa/1677:1680, 1/aa/1739:1742 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8IP8_251 | 1/aa/1683:1686, 1/aa/1733:1736 | Tandem non-canonical cWW pairs | homologous IL_8C3A_479 NA | |
| IL_8IP8_252 | 1/aa/1686:1690, 1/aa/1729:1733 | Triple sheared | homologous IL_8C3A_480 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8IP8_011 | Isolated non-canonical cWW pair | ||
| IL_8IP8_012 | Isolated non-canonical cWW pair | ||
| IL_8IP8_013 | No text annotation | ||
| IL_8IP8_020 | Isolated non-canonical cWW pair | ||
| IL_8IP8_021 | Isolated non-canonical cWW pair | ||
| IL_8IP8_256 | Single stack bend | ||
| IL_8IP8_046 | No text annotation | ||
| IL_8IP8_049 | Isolated non-canonical cWW pair | ||
| IL_8IP8_052 | No text annotation | ||
| IL_8IP8_258 | No text annotation | ||
| IL_8IP8_272 | Major groove platform | ||
| IL_8IP8_061 | Minor groove platform | ||
| IL_8IP8_062 | No text annotation | ||
| IL_8IP8_104 | Isolated non-canonical cWW pair | ||
| IL_8IP8_106 | Isolated non-canonical cWW contact | ||
| IL_8IP8_109 | No text annotation | ||
| IL_8IP8_137 | Isolated non-canonical cWW pair | ||
| IL_8IP8_163 | No text annotation | ||
| IL_8IP8_167 | Isolated non-canonical cWW pair | ||
| IL_8IP8_174 | No text annotation | ||
| IL_8IP8_176 | No text annotation | ||
| IL_8IP8_187 | No text annotation | ||
| IL_8IP8_263 | Triple sheared related | ||
| IL_8IP8_197 | Tandem non-canonical cWW pairs | ||
| IL_8IP8_205 | Tandem non-canonical cWW pairs | ||
| IL_8IP8_209 | Kink-turn | ||
| IL_8IP8_215 | No text annotation | ||
| IL_8IP8_225 | No text annotation | ||
| IL_8IP8_235 | No text annotation | ||
| IL_8IP8_253 | No text annotation | ||
| IL_8IP8_254 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8IP8_001 | 1/RB/112:122, 1/RB/148:157, 1/RB/261:265 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_8IP8_021 | 1/RB/112:123, 1/RB/143:157, 1/RB/261:265 | No text annotation | ||
| J3_8IP8_022 | 1/RB/183:187, 1/RB/203:212, 1/RB/224:229 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8IP8_023 | 1/RB/338:354, 1/RB/361:366, 1/SB/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8IP8_024 | 1/RB/367:374, 1/RB/401:402, 1/SB/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8IP8_025 | 1/RB/367:377, 1/RB/388:402, 1/SB/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8IP8_026 | 1/RB/434:441, 1/RB/496:498, 1/RB/621:626 | No text annotation | ||
| J3_8IP8_027 | 1/RB/434:441, 1/RB/496:501, 1/RB/618:626 | No text annotation | ||
| J3_8IP8_002 | 1/RB/437:441, 1/RB/496:498, 1/RB/621:625 | No text annotation | ||
| J3_8IP8_028 | 1/RB/505:506, 1/RB/571:577, 1/RB/611:614 | No text annotation | ||
| J3_8IP8_029 | 1/RB/580:581, 1/RB/590:592, 1/RB/605:608 | No text annotation | ||
| J3_8IP8_003 | 1/RB/817:823, 1/RB/908:910, 1/RB/926:929 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_8IP8_004 | 1/RB/831:834, 1/RB/866:870, 1/RB/895:900 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8IP8_030 | 1/RB/990:991, 1/RB/1066:1070, 1/RB/1096:1101 | No text annotation | ||
| J3_8IP8_005 | 1/RB/1482:1488, 1/RB/1853:1855, 1/RB/1867:1870 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8IP8_006 | 1/RB/1491:1494, 1/RB/1833:1839, 1/RB/1848:1850 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8IP8_031 | 1/RB/1529:1534, 1/RB/1588:1592, 1/RB/1610:1611 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_8IP8_007 | 1/RB/1541:1544, 1/RB/1557:1564, 1/RB/1575:1580 | No text annotation | ||
| J3_8IP8_032 | 1/RB/1541:1545, 1/RB/1554:1564, 1/RB/1575:1580 | No text annotation | ||
| J3_8IP8_033 | 1/RB/1628:1629, 1/RB/1638:1642, 1/RB/1806:1807 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8IP8_034 | 1/RB/1651:1655, 1/RB/1787:1788, 1/RB/1792:1797 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8IP8_008 | 1/RB/2424:2428, 1/RB/2509:2513, 1/RB/2588:2595 | No text annotation | ||
| J3_8IP8_009 | 1/RB/2526:2528, 1/RB/2543:2557, 1/RB/2575:2578 | No text annotation | ||
| J3_8IP8_035 | 1/RB/2648:2650, 1/RB/2751:2762, 1/RB/2790:2795 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8IP8_010 | 1/RB/2661:2663, 1/RB/2687:2689, 1/RB/2698:2703 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8IP8_011 | 1/RB/2883:2886, 1/RB/2911:2913, 1/RB/2927:2933 | No text annotation | homologous J3_8P9A_063 J3_44047.1 | |
| J3_8IP8_046 | 1/RB/3162:3167, 1/RB/3200:3211, 1/RB/3249:3268 | No text annotation | ||
| J3_8IP8_037 | 1/RB/3286:3287, 1/RB/3301:3307, 1/RB/3376:3379 | No text annotation | ||
| J3_8IP8_038 | 1/SB/44:45, 1/SB/58:64, 1/SB/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_8IP8_039 | 1/TB/9:14, 1/TB/65:66, 1/TB/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8IP8_040 | 1/aa/41:42, 1/aa/437:443, 1/aa/468:470 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8IP8_041 | 1/aa/41:48, 1/aa/435:443, 1/aa/468:470 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_8IP8_042 | 1/aa/637:640, 1/aa/865:870, 1/aa/970:971 | No text annotation | ||
| J3_8IP8_043 | 1/aa/637:640, 1/aa/865:871, 1/aa/967:971 | No text annotation | ||
| J3_8IP8_012 | 1/aa/886:889, 1/aa/933:941, 1/aa/948:952 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_8IP8_013 | 1/aa/1042:1044, 1/aa/1084:1088, 1/aa/1095:1099 | No text annotation | ||
| J3_8IP8_014 | 1/aa/1166:1169, 1/aa/1589:1595, 1/aa/1617:1624 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_8IP8_015 | 1/aa/1173:1176, 1/aa/1474:1476, 1/aa/1582:1585 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8IP8_016 | 1/aa/1185:1191, 1/aa/1202:1213, 1/aa/1460:1464 | No text annotation | ||
| J3_8IP8_017 | 1/aa/1219:1224, 1/aa/1267:1271, 1/aa/1448:1454 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8IP8_018 | 1/aa/1287:1292, 1/aa/1331:1336, 1/aa/1425:1430 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_8IP8_044 | 1/aa/1297:1298, 1/aa/1307:1310, 1/aa/1322:1326 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_8IP8_019 | 1/aa/1340:1342, 1/aa/1392:1395, 1/aa/1418:1421 | No text annotation | geometric J3_4V88_040 NA | |
| J3_8IP8_045 | 1/aa/1340:1342, 1/aa/1392:1398, 1/aa/1412:1421 | No text annotation | ||
| J3_8IP8_020 | 1/aa/1476:1480, 1/aa/1541:1548, 1/aa/1579:1582 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8IP8_001 | 1/RB/111:112, 1/RB/265:270, 1/RB/291:297, 1/RB/314:317 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8IP8_002 | 1/RB/183:187, 1/RB/203:206, 1/RB/210:212, 1/RB/224:229 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_8IP8_003 | 1/RB/1454:1460, 1/RB/1478:1479, 1/RB/1873:1876, 1/RB/2345:2346 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_8IP8_004 | 1/RB/1495:1499, 1/RB/1523:1528, 1/RB/1612:1613, 1/RB/1825:1832 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_8IP8_005 | 1/RB/1671:1672, 1/RB/1690:1691, 1/RB/1750:1751, 1/RB/1768:1769 | No text annotation | homologous J4_8P9A_016 J4_75575.1 | |
| J4_8IP8_006 | 1/RB/2124:2128, 1/RB/2140:2144, 1/RB/2179:2183, 1/RB/2310:2315 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_8IP8_007 | 1/RB/2185:2187, 1/RB/2241:2242, 1/RB/2260:2269, 1/RB/2303:2308 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8IP8_008 | 1/RB/2651:2655, 1/RB/2709:2711, 1/RB/2738:2739, 1/RB/2748:2750 | No text annotation | ||
| J4_8IP8_009 | 1/RB/2651:2655, 1/RB/2709:2713, 1/RB/2737:2739, 1/RB/2748:2750 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8IP8_010 | 1/RB/3006:3008, 1/RB/3038:3039, 1/RB/3094:3097, 1/RB/3129:3132 | No text annotation | ||
| J4_8IP8_011 | 1/aa/100:108, 1/aa/311:313, 1/aa/361:365, 1/aa/387:388 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_8IP8_012 | 1/aa/626:628, 1/aa/980:985, 1/aa/1026:1037, 1/aa/1108:1109 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8IP8_013 | 1/cl/7:10, 1/cl/25:27, 1/cl/43:49, 1/cl/65:66 | tRNA junction | homologous J4_8VU0_001 J4_95067.1 | |
| J5_8IP8_001 | 1/RB/17:21, 1/SB/35:42, 1/SB/102:107, 1/SB/115:116, 1/SB/139:143 | No text annotation | ||
| J5_8IP8_002 | 1/RB/662:667, 1/RB/802:805, 1/RB/944:947, 1/RB/1379:1380, 1/RB/1434:1440 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_8IP8_003 | 1/RB/679:682, 1/RB/708:712, 1/RB/719:724, 1/RB/752:753, 1/RB/786:790 | No text annotation | ||
| J5_8IP8_004 | 1/RB/1902:1910, 1/RB/1934:1935, 1/RB/2103:2104, 1/RB/2108:2116, 1/RB/2324:2326 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_8IP8_005 | 1/RB/2392:2399, 1/RB/2812:2820, 1/RB/2864:2873, 1/RB/2948:2954, 1/RB/2972:2977 | No text annotation | ||
| J5_8IP8_006 | 1/RB/2409:2412, 1/RB/2608:2612, 1/RB/2622:2625, 1/RB/2647:2648, 1/RB/2795:2801 | No text annotation | ||
| J5_8IP8_007 | 1/aa/31:35, 1/aa/477:483, 1/aa/513:520, 1/aa/540:550, 1/aa/596:599 | No text annotation | ||
| J5_8IP8_008 | 1/aa/54:57, 1/aa/91:98, 1/aa/390:392, 1/aa/413:415, 1/aa/426:430 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8IP8_011 | 1/aa/127:141, 1/aa/170:182, 1/aa/199:201, 1/aa/266:268, 1/aa/293:295 | No text annotation | ||
| J5_8IP8_012 | 1/aa/127:141, 1/aa/170:182, 1/aa/199:201, 1/aa/266:270, 1/aa/292:295 | No text annotation | ||
| J6_8IP8_001 | 1/RB/21:27, 1/RB/55:67, 1/RB/74:78, 1/RB/105:109, 1/RB/319:329, 1/SB/32:35 | No text annotation | ||
| J6_8IP8_002 | 1/RB/2409:2412, 1/RB/2608:2612, 1/RB/2622:2625, 1/RB/2647:2650, 1/RB/2751:2762, 1/RB/2790:2801 | No text annotation | ||
| J7_8IP8_001 | 1/RB/952:957, 1/RB/970:971, 1/RB/1117:1120, 1/RB/1144:1149, 1/RB/1160:1164, 1/RB/1342:1343, 1/RB/1369:1374 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8IP8_036 | No text annotation | ||
| J5_8IP8_009 | No text annotation | ||
| J5_8IP8_010 | No text annotation |
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