HL_8IP8_013

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUCCGCGC

Length

9 nucleotides

Bulged bases

8IP8|1|RB|G|540, 8IP8|1|RB|G|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_013 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1602

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8IP8|1|RB|G|535
8IP8|1|RB|C|536
8IP8|1|RB|U|537
8IP8|1|RB|C|538
8IP8|1|RB|C|539
8IP8|1|RB|G|540
8IP8|1|RB|C|541
8IP8|1|RB|G|542
8IP8|1|RB|C|543

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain XA

60S ribosomal protein eL14

Chain YA

60S ribosomal protein eL20