HL_8IP8_026

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_026 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.3857

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8IP8|1|RB|C|1080
8IP8|1|RB|U|1081
8IP8|1|RB|U|1082
8IP8|1|RB|C|1083
8IP8|1|RB|G|1084
8IP8|1|RB|G|1085
8IP8|1|RB|U|1086
8IP8|1|RB|G|1087

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein eL21

Chain KA

60S ribosomal protein uL18

Chain OB

60S ribosomal protein eL29