HL_8IP8_030
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAGUGCCAUG
- Length
- 11 nucleotides
- Bulged bases
- 8IP8|1|RB|A|1353, 8IP8|1|RB|U|1355, 8IP8|1|RB|C|1358, 8IP8|1|RB|U|1360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_030 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.1894
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8IP8|1|RB|C|1351
8IP8|1|RB|G|1352
8IP8|1|RB|A|1353
8IP8|1|RB|G|1354
8IP8|1|RB|U|1355
8IP8|1|RB|G|1356
8IP8|1|RB|C|1357
8IP8|1|RB|C|1358
8IP8|1|RB|A|1359
8IP8|1|RB|U|1360
8IP8|1|RB|G|1361
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein uL30
- Chain EB
- 60S ribosomal protein uL4
- Chain JA
- 60S ribosomal protein eL18
- Chain QA
- 60S ribosomal protein eL28
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