HL_8IP8_032

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_032 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1052

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8IP8|1|RB|A|1465
8IP8|1|RB|U|1466
8IP8|1|RB|G|1467
8IP8|1|RB|A|1468
8IP8|1|RB|G|1469
8IP8|1|RB|A|1470
8IP8|1|RB|A|1471
8IP8|1|RB|C|1472
8IP8|1|RB|U|1473

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain MA

60S ribosomal protein uL22

Chain SA

60S ribosomal protein eL31