HL_8IP8_034

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_034 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.2526

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IP8|1|RB|G|1547
8IP8|1|RB|U|1548
8IP8|1|RB|A|1549
8IP8|1|RB|A|1550
8IP8|1|RB|C|1551
8IP8|1|RB|C|1552

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain HA

60S ribosomal protein eL15

Chain UA

60S ribosomal protein eL37