HL_8IP8_049

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_049 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.0947

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IP8|1|RB|A|2213
8IP8|1|RB|G|2214
8IP8|1|RB|A|2215
8IP8|1|RB|A|2216
8IP8|1|RB|A|2217
8IP8|1|RB|U|2218

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein eL36

Chain WA

60S ribosomal protein eL42