HL_8IP8_052

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8IP8|1|RB|A|2365, 8IP8|1|RB|A|2366, 8IP8|1|RB|C|2367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_052 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0761

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8IP8|1|RB|G|2362
8IP8|1|RB|G|2363
8IP8|1|RB|G|2364
8IP8|1|RB|A|2365
8IP8|1|RB|A|2366
8IP8|1|RB|C|2367
8IP8|1|RB|G|2368
8IP8|1|RB|G|2369
8IP8|1|RB|G|2370
8IP8|1|RB|C|2371

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain TA

60S ribosomal protein eL32