HL_8IP8_058

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_058 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2813

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8IP8|1|RB|A|2670
8IP8|1|RB|A|2671
8IP8|1|RB|C|2672
8IP8|1|RB|A|2673
8IP8|1|RB|G|2674
8IP8|1|RB|A|2675
8IP8|1|RB|A|2676
8IP8|1|RB|A|2677
8IP8|1|RB|U|2678

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain EA

60S ribosomal protein uL5