HL_8IP8_059
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_059 not in the Motif Atlas
- Homologous match to HL_8P9A_168
- Geometric discrepancy: 0.1004
- The information below is about HL_8P9A_168
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8IP8|1|RB|C|2690
8IP8|1|RB|A|2691
8IP8|1|RB|A|2692
8IP8|1|RB|A|2693
8IP8|1|RB|A|2694
8IP8|1|RB|G|2695
8IP8|1|RB|G|2696
8IP8|1|RB|G|2697
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain HB
- 60S ribosomal protein uL16
- Chain WA
- 60S ribosomal protein eL42
- Chain cl
- Transfer RNA; tRNA
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