HL_8IP8_061

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_061 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0765

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IP8|1|RB|U|2741
8IP8|1|RB|G|2742
8IP8|1|RB|A|2743
8IP8|1|RB|A|2744
8IP8|1|RB|A|2745
8IP8|1|RB|G|2746

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein eL21

Chain KA

60S ribosomal protein uL18