HL_8IP8_069

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8IP8|1|RB|G|3112, 8IP8|1|RB|C|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0907

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8IP8|1|RB|C|3106
8IP8|1|RB|U|3107
8IP8|1|RB|G|3108
8IP8|1|RB|A|3109
8IP8|1|RB|A|3110
8IP8|1|RB|C|3111
8IP8|1|RB|G|3112
8IP8|1|RB|C|3113
8IP8|1|RB|C|3114
8IP8|1|RB|U|3115
8IP8|1|RB|C|3116
8IP8|1|RB|U|3117
8IP8|1|RB|A|3118
8IP8|1|RB|A|3119
8IP8|1|RB|G|3120

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain FA

60S ribosomal protein uL6

Chain FB

60S ribosomal protein uL13

Chain JB

60S ribosomal protein eL40