HL_8IP8_072

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

8IP8|1|RB|C|3291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_072 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0905

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8IP8|1|RB|G|3290
8IP8|1|RB|C|3291
8IP8|1|RB|A|3292
8IP8|1|RB|G|3293
8IP8|1|RB|A|3294
8IP8|1|RB|C|3295
8IP8|1|RB|G|3296
8IP8|1|RB|A|3297
8IP8|1|RB|C|3298

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain MA

60S ribosomal protein uL22