HL_8IP8_083

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8IP8|1|aa|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_083 not in the Motif Atlas

Homologous match to HL_8P9A_195

Geometric discrepancy: 0.3439

The information below is about HL_8P9A_195

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8IP8|1|aa|G|246
8IP8|1|aa|A|247
8IP8|1|aa|U|248
8IP8|1|aa|G|249
8IP8|1|aa|A|250
8IP8|1|aa|U|251
8IP8|1|aa|U|252
8IP8|1|aa|C|253

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ib

40S ribosomal protein uS17

Chain ja

40S ribosomal protein eS4