HL_8IP8_088

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8IP8|1|aa|A|420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_088 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.1349

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8IP8|1|aa|C|418
8IP8|1|aa|C|419
8IP8|1|aa|A|420
8IP8|1|aa|A|421
8IP8|1|aa|G|422
8IP8|1|aa|G|423

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain GA

60S ribosomal protein uL14

Chain gb

40S ribosomal protein eS6