HL_8IP8_089

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGACACG

Length

7 nucleotides

Bulged bases

8IP8|1|aa|A|458, 8IP8|1|aa|C|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_089 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.1704

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8IP8|1|aa|U|454
8IP8|1|aa|G|455
8IP8|1|aa|A|456
8IP8|1|aa|C|457
8IP8|1|aa|A|458
8IP8|1|aa|C|459
8IP8|1|aa|G|460

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain ja

40S ribosomal protein eS4