HL_8IP8_097

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_097 not in the Motif Atlas

Homologous match to HL_8P9A_210

Geometric discrepancy: 0.0614

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8IP8|1|aa|C|942
8IP8|1|aa|G|943
8IP8|1|aa|A|944
8IP8|1|aa|A|945
8IP8|1|aa|A|946
8IP8|1|aa|G|947

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain db

40S ribosomal protein eS26

Chain pa

40S ribosomal protein uS15