HL_8IP8_108

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_108 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.2623

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8IP8|1|aa|C|1509
8IP8|1|aa|G|1510
8IP8|1|aa|A|1511
8IP8|1|aa|C|1512
8IP8|1|aa|A|1513
8IP8|1|aa|G|1514

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain oa

40S ribosomal protein uS13

Chain ra

40S ribosomal protein eS19

Chain sa

40S ribosomal protein uS19