HL_8IP8_114
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCCAU(MIA)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_114 not in the Motif Atlas
- Homologous match to HL_9DFC_104
- Geometric discrepancy: 0.07
- The information below is about HL_9DFC_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8IP8|1|cl|G|31
8IP8|1|cl|C|32
8IP8|1|cl|C|33
8IP8|1|cl|C|34
8IP8|1|cl|A|35
8IP8|1|cl|U|36
8IP8|1|cl|MIA|37
8IP8|1|cl|A|38
8IP8|1|cl|C|39
Current chains
- Chain cl
- tRNAi
Nearby chains
- Chain aa
- Small subunit ribosomal RNA; SSU rRNA
- Chain al
- mRNA
- Chain bl
- eukaryotic release factor 1
- Chain la
- 40S ribosomal protein uS9
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