HL_8IP8_115

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA(PSU)CG(1MA)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_115 not in the Motif Atlas

Homologous match to HL_1QF6_003

Geometric discrepancy: 0.2556

The information below is about HL_1QF6_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8IP8|1|cl|G|53
8IP8|1|cl|A|54
8IP8|1|cl|PSU|55
8IP8|1|cl|C|56
8IP8|1|cl|G|57
8IP8|1|cl|1MA|58
8IP8|1|cl|A|59
8IP8|1|cl|A|60
8IP8|1|cl|C|61

Current chains

Chain cl

tRNAi

Nearby chains

Chain EA

60S ribosomal protein uL5

Chain RB

Large subunit ribosomal RNA; LSU rRNA