HL_8IP8_119

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCCCGUCAGAACU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_119 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.1079

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8IP8|1|TB|A|32
8IP8|1|TB|U|33
8IP8|1|TB|C|34
8IP8|1|TB|C|35
8IP8|1|TB|C|36
8IP8|1|TB|G|37
8IP8|1|TB|U|38
8IP8|1|TB|C|39
8IP8|1|TB|A|40
8IP8|1|TB|G|41
8IP8|1|TB|A|42
8IP8|1|TB|A|43
8IP8|1|TB|C|44
8IP8|1|TB|U|45

Current chains

Chain TB

5S ribosomal RNA

Nearby chains

Chain EA

60S ribosomal protein uL5

Chain KA

60S ribosomal protein uL18

Chain RB

Large subunit ribosomal RNA; LSU rRNA