HL_8IP9_013

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUCUAAAUCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1226

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8IP9|1|aa|A|524
8IP9|1|aa|A|525
8IP9|1|aa|U|526
8IP9|1|aa|C|527
8IP9|1|aa|U|528
8IP9|1|aa|A|529
8IP9|1|aa|A|530
8IP9|1|aa|A|531
8IP9|1|aa|U|532
8IP9|1|aa|C|533
8IP9|1|aa|C|534
8IP9|1|aa|C|535
8IP9|1|aa|U|536

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain eb

40S ribosomal protein uS4