Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8IP9_0011/aa/7:17No text annotation
homologous
HL_8C3A_192
NA
HL_8IP9_0021/aa/70:82No text annotation
HL_8IP9_0031/aa/152:158GNRA related
homologous
HL_4V88_188
NA
HL_8IP9_0051/aa/246:253T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_8IP9_0071/aa/334:342GNRA related
homologous
HL_8C3A_199
NA
HL_8IP9_0081/aa/372:377No text annotation
homologous
HL_4V88_194
NA
HL_8IP9_0091/aa/397:408No text annotation
homologous
HL_4V88_195
NA
HL_8IP9_0101/aa/418:423UNCG
homologous
HL_8C3A_202
NA
HL_8IP9_0111/aa/454:460No text annotation
homologous
HL_8C3A_203
NA
HL_8IP9_0131/aa/524:536No text annotation
geometric
HL_4V88_199
NA
HL_8IP9_0141/aa/573:578GNRA variation
homologous
HL_8C3A_206
NA
HL_8IP9_0161/aa/770:778No text annotation
homologous
HL_8C3A_208
NA
HL_8IP9_0171/aa/782:790No text annotation
geometric
HL_7KI3_001
HL_75660.6
HL_8IP9_0191/aa/905:914No text annotation
homologous
HL_8C3A_211
NA
HL_8IP9_0201/aa/942:947GNRA
homologous
HL_4V88_207
NA
HL_8IP9_0211/aa/1002:1012No text annotation
homologous
HL_4V88_208
NA
HL_8IP9_0221/aa/1062:1068GNRA
geometric
HL_6AZ4_001
NA
HL_8IP9_0231/aa/1089:1094GNRA
homologous
HL_8C3A_215
NA
HL_8IP9_0241/aa/1126:1131GNRA
homologous
HL_8C3A_216
NA
HL_8IP9_0251/aa/1192:1201No text annotation
homologous
HL_4V88_212
NA
HL_8IP9_0261/aa/1242:1251Anticodon loop related
homologous
HL_8C3A_218
NA
HL_8IP9_0271/aa/1300:1305GNRA
homologous
HL_8C3A_219
NA
HL_8IP9_0281/aa/1313:1320No text annotation
homologous
HL_4V88_215
NA
HL_8IP9_0291/aa/1363:1370No text annotation
geometric
HL_2ZNI_001
HL_75660.6
HL_8IP9_0301/aa/1402:1408GNRA
homologous
HL_4V88_217
NA
HL_8IP9_0311/aa/1509:1514GNRA
homologous
HL_8C3A_223
NA
HL_8IP9_0321/aa/1558:1569No text annotation
homologous
HL_8C3A_224
NA
HL_8IP9_0331/aa/1602:1610No text annotation
homologous
HL_8C3A_225
NA
HL_8IP9_0351/aa/1788:1793GNRA variation
homologous
HL_8C3A_227
NA
HL_8IP9_0361/cl/13:22No text annotation
homologous
HL_6PMO_003
NA
HL_8IP9_0371/cl/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_81376.1

Problematic loops

#loop idProblemSequence
HL_8IP9_004No text annotation
HL_8IP9_006Externally structured
HL_8IP9_012No text annotation
HL_8IP9_015No text annotation
HL_8IP9_018No text annotation
HL_8IP9_039No text annotation
HL_8IP9_034No text annotation
HL_8IP9_038T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8IP9_0011/aa/24:26,
1/aa/604:605
Single bulged C
homologous
IL_4V88_384
NA
IL_8IP9_0021/aa/35:37,
1/aa/475:477
Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_8IP9_0031/aa/37:41,
1/aa/470:475
Triple sheared related
homologous
IL_8C3A_394
NA
IL_8IP9_0041/aa/42:48,
1/aa/435:437
No text annotation
homologous
IL_8C3A_395
NA
IL_8IP9_0051/aa/50:52,
1/aa/432:433
Minor groove platform
homologous
IL_4V88_388
NA
IL_8IP9_0061/aa/58:63,
1/aa/88:90
No text annotation
homologous
IL_4V88_389
NA
IL_8IP9_0071/aa/64:69,
1/aa/83:87
No text annotation
IL_8IP9_0081/aa/110:113,
1/aa/306:309
Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_8IP9_0091/aa/114:117,
1/aa/304:305
Multiple bulged bases
homologous
IL_8C3A_400
NA
IL_8IP9_0101/aa/118:123,
1/aa/299:303
No text annotation
homologous
IL_4V88_393
NA
IL_8IP9_0111/aa/141:147,
1/aa/163:170
No text annotation
homologous
IL_8C3A_402
NA
IL_8IP9_0121/aa/147:150,
1/aa/160:163
Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_15225.1
IL_8IP9_0131/aa/183:184,
1/aa/197:199
Single stack bend
geometric
IL_4V9F_005
IL_15011.1
IL_8IP9_0141/aa/184:187,
1/aa/194:197
Double sheared
geometric
IL_7A0S_081
IL_58355.1
IL_8IP9_0151/aa/201:202,
1/aa/264:266
Minor groove platform
geometric
IL_7RQB_028
NA
IL_8IP9_0161/aa/202:203,
1/aa/262:264
Single bulged C
geometric
IL_1S03_002
IL_05642.1
IL_8IP9_0171/aa/203:205,
1/aa/260:262
Isolated non-canonical cWW pair
geometric
IL_3U4M_001
IL_71625.1
IL_8IP9_0191/aa/268:270,
1/aa/292:293
Single bulged A
homologous
IL_4V88_399
NA
IL_8IP9_0971/aa/273:276,
1/aa/287:289
No text annotation
homologous
IL_8P9A_389
IL_15698.4
IL_8IP9_0211/aa/315:320,
1/aa/352:359
Kink-turn with non-sequential stacking
homologous
IL_8C3A_410
NA
IL_8IP9_0221/aa/322:327,
1/aa/349:350
No text annotation
homologous
IL_8C3A_411
NA
IL_8IP9_0231/aa/367:369,
1/aa/380:385
No text annotation
homologous
IL_8P9A_393
IL_93336.1
IL_8IP9_0241/aa/393:395,
1/aa/410:412
Isolated cWH basepair
homologous
IL_8C3A_413
NA
IL_8IP9_0251/aa/415:417,
1/aa/424:426
Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_8IP9_0261/aa/443:445,
1/aa/467:468
Single bulged U
homologous
IL_4V88_407
NA
IL_8IP9_0271/aa/447:451,
1/aa/464:465
C-loop
homologous
IL_8C3A_416
NA
IL_8IP9_0281/aa/451:452,
1/aa/462:464
Single bulged G
geometric
IL_5J7L_019
NA
IL_8IP9_0291/aa/484:489,
1/aa/507:512
No text annotation
IL_8IP9_0981/aa/484:491,
1/aa/503:512
No text annotation
IL_8IP9_0311/aa/521:522,
1/aa/537:539
Minor groove platform
geometric
IL_4V88_388
NA
IL_8IP9_0321/aa/522:524,
1/aa/536:537
Minor groove platform
homologous
IL_4V88_412
NA
IL_8IP9_0331/aa/554:561,
1/aa/591:592
SSU/LSU pseudoknot
homologous
IL_8C3A_423
NA
IL_8IP9_0341/aa/561:563,
1/aa/590:591
Single bulged U
geometric
IL_2OIU_003
IL_97561.1
IL_8IP9_0351/aa/566:572,
1/aa/579:587
Kink-turn related
homologous
IL_8C3A_425
NA
IL_8IP9_0361/aa/618:620,
1/aa/1110:1112
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_8IP9_0371/aa/620:626,
1/aa/1109:1110
No text annotation
geometric
IL_4LFB_022
IL_20847.1
IL_8IP9_0381/aa/628:630,
1/aa/978:980
Isolated non-canonical cWW pair
homologous
IL_8C3A_427
NA
IL_8IP9_0391/aa/631:635,
1/aa/973:977
tSH-tHW-tHS
homologous
IL_8C3A_428
NA
IL_8IP9_0411/aa/752:753,
1/aa/808:811
Major groove minor groove platform; mini C-loop
homologous
IL_8C3A_430
NA
IL_8IP9_0421/aa/754:756,
1/aa/805:807
Isolated non-canonical cWW pair
homologous
IL_8C3A_431
NA
IL_8IP9_0431/aa/757:765,
1/aa/797:804
No text annotation
homologous
IL_4V88_425
NA
IL_8IP9_0991/aa/766:769,
1/aa/779:796
No text annotation
IL_8IP9_0461/aa/870:871,
1/aa/967:970
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_8IP9_1001/aa/873:874,
1/aa/963:965
Single bulged U
geometric
IL_3NDB_005
NA
IL_8IP9_0481/aa/876:879,
1/aa/958:961
Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_8IP9_0491/aa/879:883,
1/aa/955:958
Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_8IP9_0501/aa/890:893,
1/aa/929:932
Tandem non-canonical cWW pairs
homologous
IL_8C3A_439
NA
IL_8IP9_1011/aa/900:904,
1/aa/915:922
Kink-turn
geometric
IL_4V88_434
NA
IL_8IP9_0521/aa/990:995,
1/aa/1019:1021
No text annotation
homologous
IL_8C3A_441
NA
IL_8IP9_0531/aa/995:999,
1/aa/1015:1019
tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_8IP9_0541/aa/1039:1041,
1/aa/1100:1106
No text annotation
homologous
IL_4V88_437
NA
IL_8IP9_0551/aa/1046:1049,
1/aa/1079:1082
Tandem non-canonical cWW pairs
homologous
IL_8C3A_444
NA
IL_8IP9_0561/aa/1056:1058,
1/aa/1071:1072
Single stack bend
geometric
IL_4V9F_081
IL_15011.1
IL_8IP9_0571/aa/1060:1062,
1/aa/1068:1069
No text annotation
IL_8IP9_0581/aa/1116:1123,
1/aa/1134:1139
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_8IP9_0591/aa/1151:1152,
1/aa/1638:1640
Single bulged A
homologous
IL_8C3A_447
NA
IL_8IP9_0601/aa/1154:1156,
1/aa/1635:1636
Single bulged G
homologous
IL_8C3A_448
NA
IL_8IP9_0611/aa/1162:1165,
1/aa/1625:1629
C-loop
homologous
IL_8C3A_449
NA
IL_8IP9_0621/aa/1178:1180,
1/aa/1470:1472
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_8IP9_0631/aa/1183:1185,
1/aa/1464:1467
No text annotation
IL_8IP9_0641/aa/1217:1219,
1/aa/1454:1456
Isolated non-canonical cWW pair
homologous
IL_8C3A_452
NA
IL_8IP9_0651/aa/1228:1234,
1/aa/1261:1263
No text annotation
IL_8IP9_1021/aa/1228:1237,
1/aa/1256:1263
Kink-turn
geometric
IL_4V88_447
NA
IL_8IP9_0661/aa/1234:1237,
1/aa/1256:1261
No text annotation
IL_8IP9_1031/aa/1237:1240,
1/aa/1253:1256
No text annotation
IL_8IP9_0681/aa/1272:1274,
1/aa/1446:1447
Single bulged U
homologous
IL_8C3A_455
NA
IL_8IP9_0691/aa/1276:1280,
1/aa/1442:1444
No text annotation
homologous
IL_8C3A_456
NA
IL_8IP9_1041/aa/1276:1281,
1/aa/1440:1444
No text annotation
geometric
IL_6CZR_365
NA
IL_8IP9_1051/aa/1276:1282,
1/aa/1436:1444
No text annotation
geometric
IL_4V88_510
NA
IL_8IP9_1061/aa/1280:1281,
1/aa/1440:1442
No text annotation
IL_8IP9_1071/aa/1281:1282,
1/aa/1436:1440
Minor groove platform
geometric
IL_4LFB_045
IL_24264.1
IL_8IP9_0711/aa/1284:1285,
1/aa/1432:1434
Single bulged A
homologous
IL_8C3A_458
NA
IL_8IP9_0721/aa/1293:1296,
1/aa/1327:1330
Tandem non-canonical cWW pairs
geometric
IL_4EYA_008
IL_15225.1
IL_8IP9_0731/aa/1310:1312,
1/aa/1321:1322
Minor groove platform
homologous
IL_8C3A_460
NA
IL_8IP9_0741/aa/1343:1346,
1/aa/1389:1391
Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_8IP9_0751/aa/1349:1352,
1/aa/1383:1386
Minor groove platform
homologous
IL_4V88_456
NA
IL_8IP9_1081/aa/1353:1357,
1/aa/1376:1382
Partly complementary
geometric
IL_6CZR_167
NA
IL_8IP9_0771/aa/1395:1398,
1/aa/1412:1418
No text annotation
geometric
IL_5J7L_053
NA
IL_8IP9_0781/aa/1483:1485,
1/aa/1536:1538
Isolated non-canonical cWW pair
geometric
IL_4KYY_003
NA
IL_8IP9_1091/aa/1485:1493,
1/aa/1527:1536
No text annotation
IL_8IP9_0791/aa/1494:1502,
1/aa/1521:1526
No text annotation
IL_8IP9_0801/aa/1504:1506,
1/aa/1517:1519
Isolated non-canonical cWW pair
homologous
IL_8C3A_468
NA
IL_8IP9_0811/aa/1548:1553,
1/aa/1574:1579
No text annotation
homologous
IL_4V88_462
NA
IL_8IP9_0821/aa/1644:1646,
1/aa/1774:1777
No text annotation
geometric
IL_5J7L_058
NA
IL_8IP9_0831/aa/1646:1649,
1/aa/1770:1774
No text annotation
homologous
IL_4V88_464
NA
IL_8IP9_0841/aa/1650:1652,
1/aa/1767:1769
Isolated non-canonical cWW pair
geometric
IL_3GM7_003
IL_01003.1
IL_8IP9_0851/aa/1652:1654,
1/aa/1764:1767
Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_8IP9_0861/aa/1655:1657,
1/aa/1761:1763
Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.1
IL_8IP9_0871/aa/1658:1660,
1/aa/1758:1760
Isolated non-canonical cWW pair
homologous
IL_8C3A_474
NA
IL_8IP9_0881/aa/1661:1664,
1/aa/1754:1757
Double sheared
geometric
IL_4LFB_060
IL_58355.1
IL_8IP9_0901/aa/1672:1675,
1/aa/1744:1747
Tandem non-canonical cWW pairs
geometric
IL_4K27_001
NA
IL_8IP9_0911/aa/1677:1680,
1/aa/1739:1742
Double sheared
homologous
IL_8C3A_478
NA
IL_8IP9_0921/aa/1683:1686,
1/aa/1733:1736
Tandem non-canonical cWW pairs
homologous
IL_8C3A_479
NA
IL_8IP9_0931/aa/1686:1690,
1/aa/1729:1733
Triple sheared
geometric
IL_7RQB_075
NA

Problematic loops

#loop idProblemSequence
IL_8IP9_096No text annotation
IL_8IP9_018No text annotation
IL_8IP9_020No text annotation
IL_8IP9_030No text annotation
IL_8IP9_040Isolated non-canonical cWW pair
IL_8IP9_044No text annotation
IL_8IP9_045No text annotation
IL_8IP9_047No text annotation
IL_8IP9_051Kink-turn
IL_8IP9_067No text annotation
IL_8IP9_070Minor groove platform with extra cWW
IL_8IP9_076No text annotation
IL_8IP9_089Single bulged U
IL_8IP9_094No text annotation
IL_8IP9_095No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8IP9_0101/aa/41:42,
1/aa/437:443,
1/aa/468:470
No text annotation
geometric
J3_4V88_078
NA
J3_8IP9_0111/aa/41:48,
1/aa/435:443,
1/aa/468:470
No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_8IP9_0121/aa/637:640,
1/aa/865:870,
1/aa/970:971
No text annotation
J3_8IP9_0131/aa/637:640,
1/aa/865:871,
1/aa/967:971
No text annotation
J3_8IP9_0011/aa/886:889,
1/aa/933:941,
1/aa/948:952
No text annotation
homologous
J3_4V88_033
NA
J3_8IP9_0021/aa/1042:1044,
1/aa/1084:1088,
1/aa/1095:1099
No text annotation
homologous
J3_4V88_034
NA
J3_8IP9_0031/aa/1166:1169,
1/aa/1589:1595,
1/aa/1617:1624
No text annotation
homologous
J3_4V88_035
NA
J3_8IP9_0041/aa/1173:1176,
1/aa/1474:1476,
1/aa/1582:1585
No text annotation
homologous
J3_8C3A_039
NA
J3_8IP9_0051/aa/1185:1191,
1/aa/1202:1213,
1/aa/1460:1464
No text annotation
J3_8IP9_0061/aa/1219:1224,
1/aa/1267:1271,
1/aa/1448:1454
No text annotation
homologous
J3_4V88_038
NA
J3_8IP9_0071/aa/1287:1292,
1/aa/1331:1336,
1/aa/1425:1430
No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_8IP9_0141/aa/1297:1298,
1/aa/1307:1310,
1/aa/1322:1326
No text annotation
homologous
J3_8C3A_085
NA
J3_8IP9_0081/aa/1340:1342,
1/aa/1392:1395,
1/aa/1418:1421
No text annotation
homologous
J3_4V88_040
NA
J3_8IP9_0151/aa/1340:1342,
1/aa/1392:1398,
1/aa/1412:1421
No text annotation
J3_8IP9_0091/aa/1476:1480,
1/aa/1541:1548,
1/aa/1579:1582
No text annotation
homologous
J3_8C3A_044
NA
J4_8IP9_0011/aa/100:108,
1/aa/311:313,
1/aa/361:365,
1/aa/387:388
No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_8IP9_0021/aa/626:628,
1/aa/980:985,
1/aa/1026:1037,
1/aa/1108:1109
No text annotation
homologous
J4_8C3A_022
NA
J4_8IP9_0031/cl/7:10,
1/cl/25:27,
1/cl/43:49,
1/cl/65:66
tRNA junction
homologous
J4_5AXM_001
J4_58311.1
J5_8IP9_0011/aa/31:35,
1/aa/477:483,
1/aa/513:520,
1/aa/540:550,
1/aa/596:599
No text annotation
J5_8IP9_0021/aa/54:57,
1/aa/91:98,
1/aa/390:392,
1/aa/413:415,
1/aa/426:430
No text annotation
homologous
J5_8C3A_020
NA
J5_8IP9_0031/aa/127:141,
1/aa/170:184,
1/aa/197:201,
1/aa/266:268,
1/aa/293:295
No text annotation
J5_8IP9_0041/aa/127:141,
1/aa/170:184,
1/aa/197:201,
1/aa/266:270,
1/aa/292:295
No text annotation

Problematic loops

No problematic loops


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