HL_8IP9_017

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCAUCGCU

Length

9 nucleotides

Bulged bases

8IP9|1|aa|U|786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_017 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1035

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8IP9|1|aa|G|782
8IP9|1|aa|C|783
8IP9|1|aa|C|784
8IP9|1|aa|A|785
8IP9|1|aa|U|786
8IP9|1|aa|C|787
8IP9|1|aa|G|788
8IP9|1|aa|C|789
8IP9|1|aa|U|790

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain eb

40S ribosomal protein uS4

Chain ja

40S ribosomal protein eS4