HL_8IP9_022

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_022 not in the Motif Atlas

Geometric match to HL_6AZ4_001

Geometric discrepancy: 0.3131

The information below is about HL_6AZ4_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8IP9|1|aa|C|1062
8IP9|1|aa|U|1063
8IP9|1|aa|U|1064
8IP9|1|aa|A|1065
8IP9|1|aa|U|1066
8IP9|1|aa|A|1067
8IP9|1|aa|G|1068

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain bb

40S ribosomal protein eS1

Chain xa

40S ribosomal protein eS27