HL_8IP9_029

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCAUCCC

Length

8 nucleotides

Bulged bases

8IP9|1|aa|C|1365, 8IP9|1|aa|A|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_029 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1831

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8IP9|1|aa|G|1363
8IP9|1|aa|C|1364
8IP9|1|aa|C|1365
8IP9|1|aa|A|1366
8IP9|1|aa|U|1367
8IP9|1|aa|C|1368
8IP9|1|aa|C|1369
8IP9|1|aa|C|1370

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain la

40S ribosomal protein uS9

Chain ra

40S ribosomal protein eS19