HL_8IP9_038

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA(PSU)CG(1MA)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_038 not in the Motif Atlas

Homologous match to HL_5UD5_003

Geometric discrepancy: 0.3385

The information below is about HL_5UD5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8IP9|1|cl|G|53
8IP9|1|cl|A|54
8IP9|1|cl|PSU|55
8IP9|1|cl|C|56
8IP9|1|cl|G|57
8IP9|1|cl|1MA|58
8IP9|1|cl|A|59
8IP9|1|cl|A|60
8IP9|1|cl|C|61

Current chains

Chain cl

tRNAi

Nearby chains