HL_8IPD_017
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- C(OMG)UCUUGAAC(A2M)CG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPD_017 not in the Motif Atlas
- Geometric match to HL_5TBW_226
- Geometric discrepancy: 0.3947
- The information below is about HL_5TBW_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59342.2
- Basepair signature
- cWW-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8IPD|1|2|C|1315
8IPD|1|2|OMG|1316
8IPD|1|2|U|1317
8IPD|1|2|C|1318
8IPD|1|2|U|1319
8IPD|1|2|U|1320
8IPD|1|2|G|1321
8IPD|1|2|A|1323
8IPD|1|2|A|1324
8IPD|1|2|C|1325
8IPD|1|2|A2M|1326
8IPD|1|2|C|1327
8IPD|1|2|G|1328
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L27a
- Chain k
- 60S ribosomal protein L32
- Chain w
- G Protein Nucleolar 2
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