HL_8IPD_028

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8IPD|1|2|G|1819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_028 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2324

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IPD|1|2|C|1816
8IPD|1|2|U|1817
8IPD|1|2|G|1818
8IPD|1|2|G|1819
8IPD|1|2|C|1820
8IPD|1|2|G|1821
8IPD|1|2|U|1822
8IPD|1|2|G|1823

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L5

Chain T

60S ribosomal protein L21