HL_8IPD_029
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUAAGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPD_029 not in the Motif Atlas
- Geometric match to HL_4V9F_039
- Geometric discrepancy: 0.3002
- The information below is about HL_4V9F_039
- Detailed Annotation
- Other HL
- Broad Annotation
- Other HL
- Motif group
- HL_67772.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8IPD|1|2|G|1864
8IPD|1|2|G|1865
8IPD|1|2|U|1866
8IPD|1|2|A|1867
8IPD|1|2|A|1868
8IPD|1|2|G|1869
8IPD|1|2|C|1870
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain u
- Guanine nucleotide-binding protein-like 3
- Chain w
- G Protein Nucleolar 2
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