HL_8IPD_030
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPD_030 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.2985
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IPD|1|2|G|1886
8IPD|1|2|G|1887
8IPD|1|2|A|1888
8IPD|1|2|U|1889
8IPD|1|2|G|1890
8IPD|1|2|A|1891
8IPD|1|2|A|1892
8IPD|1|2|C|1893
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain k
- 60S ribosomal protein L32
- Chain n
- 60S ribosomal protein L35a
- Chain u
- Guanine nucleotide-binding protein-like 3
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