HL_8IPD_031
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 8IPD|1|2|A|1984
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPD_031 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.3016
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8IPD|1|2|C|1978
8IPD|1|2|A|1979
8IPD|1|2|U|1980
8IPD|1|2|G|1981
8IPD|1|2|G|1982
8IPD|1|2|A|1983
8IPD|1|2|A|1984
8IPD|1|2|G|1985
8IPD|1|2|U|1986
8IPD|1|2|C|1987
8IPD|1|2|G|1988
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain w
- G Protein Nucleolar 2
- Chain y
- 60S ribosomal protein L12
Coloring options: