HL_8IPD_057

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

8IPD|1|2|G|4139, 8IPD|1|2|G|4141, 8IPD|1|2|C|4142, 8IPD|1|2|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_057 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2267

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IPD|1|2|C|4138
8IPD|1|2|G|4139
8IPD|1|2|C|4140
8IPD|1|2|G|4141
8IPD|1|2|C|4142
8IPD|1|2|G|4143
8IPD|1|2|C|4144
8IPD|1|2|C|4145
8IPD|1|2|G|4146

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain i

60S ribosomal protein L27