HL_8IPD_067
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPD_067 not in the Motif Atlas
- Geometric match to HL_5J7L_197
- Geometric discrepancy: 0.1433
- The information below is about HL_5J7L_197
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
8IPD|1|2|C|4603
8IPD|1|2|G|4604
8IPD|1|2|A|4605
8IPD|1|2|G|4606
8IPD|1|2|A|4607
8IPD|1|2|G|4608
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain 6
- Eukaryotic translation initiation factor 6
- Chain I
- 60S ribosomal protein L9
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain e
- 60S ribosomal protein L23
- Chain w
- G Protein Nucleolar 2
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