HL_8IPD_069
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CU(B8K)AACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8IPD|1|2|G|4694, 8IPD|1|2|C|4698
- QA status
- Modified nucleotides: B8K
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPD_069 not in the Motif Atlas
- Geometric match to HL_5TBW_067
- Geometric discrepancy: 0.1306
- The information below is about HL_5TBW_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8IPD|1|2|C|4688
8IPD|1|2|U|4689
8IPD|1|2|B8K|4690
8IPD|1|2|A|4691
8IPD|1|2|A|4692
8IPD|1|2|C|4693
8IPD|1|2|G|4694
8IPD|1|2|C|4695
8IPD|1|2|C|4696
8IPD|1|2|U|4697
8IPD|1|2|C|4698
8IPD|1|2|U|4699
8IPD|1|2|A|4700
8IPD|1|2|A|4701
8IPD|1|2|G|4702
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L9
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain V
- 60S ribosomal protein L13a
- Chain r
- Coiled-coil domain-containing protein 86
- Chain v
- mRNA turnover protein 4 homolog
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